Serveur d'exploration sur la COVID chez les séniors

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A machine learning algorithm to increase COVID-19 inpatient diagnostic capacity.

Identifieur interne : 000983 ( Main/Exploration ); précédent : 000982; suivant : 000984

A machine learning algorithm to increase COVID-19 inpatient diagnostic capacity.

Auteurs : David Goodman-Meza [États-Unis] ; Akos Rudas [États-Unis, Hongrie] ; Jeffrey N. Chiang [États-Unis] ; Paul C. Adamson [États-Unis] ; Joseph Ebinger [États-Unis] ; Nancy Sun [États-Unis] ; Patrick Botting [États-Unis] ; Jennifer A. Fulcher [États-Unis] ; Faysal G. Saab [États-Unis] ; Rachel Brook [États-Unis] ; Eleazar Eskin [États-Unis] ; Ulzee An [États-Unis] ; Misagh Kordi [États-Unis] ; Brandon Jew [États-Unis] ; Brunilda Balliu [États-Unis] ; Zeyuan Chen [États-Unis] ; Brian L. Hill [États-Unis] ; Elior Rahmani [États-Unis] ; Eran Halperin [États-Unis] ; Vladimir Manuel [États-Unis]

Source :

RBID : pubmed:32960917

Descripteurs français

English descriptors

Abstract

Worldwide, testing capacity for SARS-CoV-2 is limited and bottlenecks in the scale up of polymerase chain reaction (PCR-based testing exist. Our aim was to develop and evaluate a machine learning algorithm to diagnose COVID-19 in the inpatient setting. The algorithm was based on basic demographic and laboratory features to serve as a screening tool at hospitals where testing is scarce or unavailable. We used retrospectively collected data from the UCLA Health System in Los Angeles, California. We included all emergency room or inpatient cases receiving SARS-CoV-2 PCR testing who also had a set of ancillary laboratory features (n = 1,455) between 1 March 2020 and 24 May 2020. We tested seven machine learning models and used a combination of those models for the final diagnostic classification. In the test set (n = 392), our combined model had an area under the receiver operator curve of 0.91 (95% confidence interval 0.87-0.96). The model achieved a sensitivity of 0.93 (95% CI 0.85-0.98), specificity of 0.64 (95% CI 0.58-0.69). We found that our machine learning algorithm had excellent diagnostic metrics compared to SARS-CoV-2 PCR. This ensemble machine learning algorithm to diagnose COVID-19 has the potential to be used as a screening tool in hospital settings where PCR testing is scarce or unavailable.

DOI: 10.1371/journal.pone.0239474
PubMed: 32960917
PubMed Central: PMC7508387


Affiliations:


Links toward previous steps (curation, corpus...)


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<term>Clinical Laboratory Techniques (methods)</term>
<term>Clinical Laboratory Techniques (standards)</term>
<term>Coronavirus Infections (diagnosis)</term>
<term>Humans (MeSH)</term>
<term>Inpatients (MeSH)</term>
<term>Los Angeles (MeSH)</term>
<term>Machine Learning (MeSH)</term>
<term>Mass Screening (methods)</term>
<term>Mass Screening (standards)</term>
<term>Middle Aged (MeSH)</term>
<term>Pandemics (MeSH)</term>
<term>Pneumonia, Viral (diagnosis)</term>
<term>Polymerase Chain Reaction (MeSH)</term>
<term>Retrospective Studies (MeSH)</term>
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<term>Adulte (MeSH)</term>
<term>Adulte d'âge moyen (MeSH)</term>
<term>Aire sous la courbe (MeSH)</term>
<term>Apprentissage machine (MeSH)</term>
<term>Betacoronavirus (MeSH)</term>
<term>Dépistage de masse (méthodes)</term>
<term>Dépistage de masse (normes)</term>
<term>Humains (MeSH)</term>
<term>Infections à coronavirus (diagnostic)</term>
<term>Los Angeles (MeSH)</term>
<term>Pandémies (MeSH)</term>
<term>Patients hospitalisés (MeSH)</term>
<term>Pneumopathie virale (diagnostic)</term>
<term>Réaction de polymérisation en chaîne (MeSH)</term>
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<term>Techniques de laboratoire clinique (normes)</term>
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<term>Pneumopathie virale</term>
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<div type="abstract" xml:lang="en">Worldwide, testing capacity for SARS-CoV-2 is limited and bottlenecks in the scale up of polymerase chain reaction (PCR-based testing exist. Our aim was to develop and evaluate a machine learning algorithm to diagnose COVID-19 in the inpatient setting. The algorithm was based on basic demographic and laboratory features to serve as a screening tool at hospitals where testing is scarce or unavailable. We used retrospectively collected data from the UCLA Health System in Los Angeles, California. We included all emergency room or inpatient cases receiving SARS-CoV-2 PCR testing who also had a set of ancillary laboratory features (n = 1,455) between 1 March 2020 and 24 May 2020. We tested seven machine learning models and used a combination of those models for the final diagnostic classification. In the test set (n = 392), our combined model had an area under the receiver operator curve of 0.91 (95% confidence interval 0.87-0.96). The model achieved a sensitivity of 0.93 (95% CI 0.85-0.98), specificity of 0.64 (95% CI 0.58-0.69). We found that our machine learning algorithm had excellent diagnostic metrics compared to SARS-CoV-2 PCR. This ensemble machine learning algorithm to diagnose COVID-19 has the potential to be used as a screening tool in hospital settings where PCR testing is scarce or unavailable.</div>
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<AbstractText>Worldwide, testing capacity for SARS-CoV-2 is limited and bottlenecks in the scale up of polymerase chain reaction (PCR-based testing exist. Our aim was to develop and evaluate a machine learning algorithm to diagnose COVID-19 in the inpatient setting. The algorithm was based on basic demographic and laboratory features to serve as a screening tool at hospitals where testing is scarce or unavailable. We used retrospectively collected data from the UCLA Health System in Los Angeles, California. We included all emergency room or inpatient cases receiving SARS-CoV-2 PCR testing who also had a set of ancillary laboratory features (n = 1,455) between 1 March 2020 and 24 May 2020. We tested seven machine learning models and used a combination of those models for the final diagnostic classification. In the test set (n = 392), our combined model had an area under the receiver operator curve of 0.91 (95% confidence interval 0.87-0.96). The model achieved a sensitivity of 0.93 (95% CI 0.85-0.98), specificity of 0.64 (95% CI 0.58-0.69). We found that our machine learning algorithm had excellent diagnostic metrics compared to SARS-CoV-2 PCR. This ensemble machine learning algorithm to diagnose COVID-19 has the potential to be used as a screening tool in hospital settings where PCR testing is scarce or unavailable.</AbstractText>
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<Affiliation>Division of Infectious Diseases, David Geffen School of Medicine at UCLA, Los Angeles, California, United States of America.</Affiliation>
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<Affiliation>Faculty of Informatics, Eötvös Loránd University (ELTE), Budapest, Hungary.</Affiliation>
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